Example I:
Model building and equilibration of a 98 lipid Dodecyl-b-D-maltopyranoside (DDM)
micelle
Input mask:
Results page:
The file results.tar.gz contains: PDB file of the initial micelle model: micelle_EMB_98_4.0_NaCl_0.15_init.pdb PDB file of the solvated system: micelle_EMB_98_4.0_NaCl_0.15_solv_ions.pdb Topology file of the solvated system: micelle_EMB_98_4.0_NaCl_0.15_solv_ions.prmtop Input coordinates of the solvated system: micelle_EMB_98_4.0_NaCl_0.15_solv_ions.inpcrd.gz PDB file of the equilibrated system: micelle_EMB_98_4.0_NaCl_0.15_solv_ions_final.pdb Coordinate file of the equilibrated system: equil17_micelle_EMB_98_4.0_NaCl_0.15.restrt.mdcrd.gz Restart file of the equilibrated system: equil17_micelle_EMB_98_4.0_NaCl_0.15.restrt
Please find here the original results
page